Check these first
- Check if the spots have a yellow halo.
- Examine the fruit for similar markings.
- Ensure the leaves are not staying wet after watering.
Likely causes
Citrus Canker
PossibleHow to tell: Small, raised, tan or brown spots appear on leaves, stems, or fruit. They often have a yellow halo around them.
What to do: Prune away severely infected branches using sterilized shears. Keep the foliage dry by watering at the base of the plant instead of overhead.
Fungal Leaf Spot
PossibleHow to tell: Dark brown or black spots with irregular shapes appear on the leaves. This usually happens when the tree stays wet for too long.
What to do: Increase air circulation around the tree by moving it to a spot with better airflow. Remove fallen leaves from the soil surface to prevent spores from spreading.
Find out what's wrong with your key lime
The list above covers the usual causes. Pocket Botanist looks at a photo of your actual plant and tells you the likely cause, how serious it is, and what to try first. Identification and a health check are free.
Scan with your phone's camera to get the app
Or go to pocketbotanist.app/get on your phone
When to worry
If the spots are spreading rapidly or causing fruit to drop, it is a serious issue. Minor cosmetic spotting is usually not a threat to the tree.
Stopping it coming back
Water the soil directly rather than wetting the leaves. Ensure the tree gets plenty of direct sunlight to help the foliage dry quickly.
Key lime: spots? Check yours with a photo
Every plant is a little different. Take a photo of your key lime and Pocket Botanist tells you which cause is most likely, how serious it is, and what to try first. A few checks a day are free. Save the plant and you get care reminders timed for it.
Scan with your phone's camera to get the app
Or go to pocketbotanist.app/get on your phone
Get the app · Or check it from a photo now, free
Questions people ask
- Is citrus canker contagious?
- Yes, it spreads easily through wind and water splashes. Isolate the plant if you suspect it has canker.
- Can I eat the fruit if the tree has spots?
- If the spots are just on the rind, the fruit is generally safe to eat. However, do not share the fruit if the tree has a confirmed bacterial infection.
Guides to these causes
More problems with Key lime
- Why are my Key lime tree leaves turning yellow?
- How do I get rid of pests on my Key lime tree?
- Why is my Key lime tree dropping leaves?
- Why is my Key lime tree not blooming?
- How do I fix root rot on my Key lime?
- Why are my Key lime tree leaves curling?
- Why are my Key lime tree leaf tips turning brown?
- Why is my Key lime tree drooping?
- Why is my Key lime tree looking so leggy?
This article was generated with AI on from the plant’s care profile and is general information, not horticultural advice. Read about how we build these guides.

